PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015877-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 369aa MW: 39799.8 Da PI: 6.4319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015877-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.6e-05	278	316	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L++A+ YI+ Lq AHYPO_015877-RA 278 RKEKLGERIAALHQLVSPF-----GKTDTASVLTEAIGYIQFLQ 316 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.242	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.24E-6	276	320	No hit	No description
SuperFamily	SSF47459	1.96E-9	276	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-7	280	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MDSTNFQHQH EHDQHHLQDH FVGCSSINLP SSGYVVSSSL DWNSSILPSS TNTTFSHKNE 60 QQDQSELTLL SSTTAIPKLE DDMLSSFPSF SGLIHNPGTA NNPLENINPW FNGLISSNGM 120 PYSRGLMQFP LEINNNNWSN NNNNGFPNST SFLNQMGLGV SSPNNSNAST VSSSSPRLGL 180 NLQAMDFLGN NNSSSFGAQT RPNMSYDVVG EEVISPAGKI LSNNNKNSSL MNGSITGTKR 240 AAAGNSTTDN QSKASSTNNS VATKKSSLKV SCPPFKVRKE KLGERIAALH QLVSPFGKTD 300 TASVLTEAIG YIQFLQDQIH GIGNDQGDGK NEAIRIDLQG RGLCLVPFSW TSYITLTQMD 360 ASNHPSYF*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MDSTNFQHQH EHDQHHLQDH FVGCSSINLP SSGYVVSSSL DWNSSILPSS TNTTFSHKNE  60
QQDQSELTLL SSTTAIPKLE DDMLSSFPSF SGLIHNPGTA NNPLENINPW FNGLISSNGM  120
PYSRGLMQFP LEINNNNWSN NNNNGFPNST SFLNQMGLGV SSPNNSNAST VSSSSPRLGL  180
NLQAMDFLGN NNSSSFGAQT RPNMSYDVVG EEVISPAGKI LSNNNKNSSL MNGSITGTKR  240
AAAGNSTTDN QSKASSTNNS VATKKSSLKV SCPPFKVRKE KLGERIAALH QLVSPFGKTD  300
TASVLTEAIG YIQFLQDQIH GIGNDQGDGK NEAIRIDLQG RGLCLVPFSW TSYITLTQMD  360
ASNHPSYF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021718065.1	1e-148	transcription factor bHLH110-like
STRING	XP_010679784.1	1e-132	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_015877-RA