PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015908-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 171aa MW: 19029.9 Da PI: 9.4286

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015908-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H +H AHYPO_015908-RA 40 YECKTCNRQFSSFQALGGHRASH 62 99**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.32E-9	38	115	No hit	No description
Pfam	PF13912	1.0E-12	39	64	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	40	62	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.783	40	67	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.871	93	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.64	93	115	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.8E-9	93	117	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0071289	Biological Process	cellular response to nickel ion
GO:2000280	Biological Process	regulation of root development
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MGIKRNREDF QLERTVAMAN YLILLSRPEN PALVGPTRVY ECKTCNRQFS SFQALGGHRA 60 SHKKPRTLMG DHDHMMEDNR MDENASSRKS KLHACSICGL EFSIGQALGG HMRRHRAALT 120 GSSLLPNVSS VKKIKMDHND NKSRFVCLDL NLTPLENGLL EIGQLTPVVC *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021861960.1	8e-68	zinc finger protein ZAT12
TrEMBL	A0A0K9S341	2e-66	A0A0K9S341_SPIOL; Uncharacterized protein
STRING	XP_010669838.1	3e-63	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	1e-34	C2H2 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_015908-RA