PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015940-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 303aa MW: 34361.9 Da PI: 9.0756

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015940-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.3	1.5e-32	64	205	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+e++ +L++kv+++ l + +i+ +i++++P +Lp v+++ +fF++ +k+y+tg+rk+r+++ AHYPO_015940-RA 64 LPAGVKFDPTDSEIL-GHLEAKVKSDLsklhplL---HefipTIEGEnGICYTHPDKLP-GVTKDGVMRHFFHCPSKAYTTGTRKRRKVHtdee 152 799*********9.89*99885665442...133334666557******.455556678**************7444455 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk++++l+ +g +g kk+Lv+y gr++k+ekt+Wvmh+y+l AHYPO_015940-RA 153 dggETRWHKTGKTRPILV-NGVIKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 205 555778********.999*******6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-37	60	224	IPR003441	NAC domain
PROSITE profile	PS51005	31.786	64	224	IPR003441	NAC domain
Pfam	PF02365	5.5E-15	65	205	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MTWCNLNILK NNPMNINSTN TSNSTRLGGI YSKINLMYTH ICPSCGHHMS VSDQGSGINY 60 LPGLPAGVKF DPTDSEILGH LEAKVKSDLS KLHPLLHEFI PTIEGENGIC YTHPDKLPGV 120 TKDGVMRHFF HCPSKAYTTG TRKRRKVHTD EEDGGETRWH KTGKTRPILV NGVIKGFKKI 180 LVLYTNYGRQ KKPEKTNWVM HQYHLGLNEE EKEGEFVLSK VFYQTQPRQC GTNFKEVSQH 240 NEHPKAPLNY YHPTYISYDH HHHHQHSVIG EQNRESTPHL NPNLVLQGDV SSLFLAPPSR 300 KS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686394.1	1e-160	PREDICTED: NAC domain-containing protein 10
Swissprot	O49459	1e-109	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0K9R6G2	1e-153	A0A0K9R6G2_SPIOL; Uncharacterized protein
STRING	XP_010686394.1	1e-159	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-110	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	AHYPO_015940-RA

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]