PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015944-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

VOZ

Protein Properties

Length: 484aa MW: 54302.8 Da PI: 5.6677

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015944-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	438.7	7.5e-135	206	422	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 p+p+aflgpkcalwdc+rpaqgs+w+ dycssfhatlalneg+pg+tpvlrp+gi+lkdgllfaalsakvqgk+vgipecegaatakspwna+e AHYPO_015944-RA 206 PSPAAFLGPKCALWDCPRPAQGSDWWLDYCSSFHATLALNEGPPGMTPVLRPGGIGLKDGLLFAALSAKVQGKDVGIPECEGAATAKSPWNAPE 299 89****************************************************************************************** PP VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelk 188 lfdls+lege irewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm ef+glkrsyymdpqp++++ewhlyeyein++da+alyrlelk AHYPO_015944-RA 300 LFDLSVLEGENIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMDEFSGLKRSYYMDPQPLNNYEWHLYEYEINKCDACALYRLELK 393 ****************************************************************************************** PP VOZ 189 lvdekksakgkvskdsladlqkklgrlta 217 lvd kk+++gk ++ds+++lqk++grlta AHYPO_015944-RA 394 LVDRKKTPRGKSANDSVSELQKQMGRLTA 422 *************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MRKVLKRNGC KSASHQFFKD RAKNRVDDLQ MVFSDLQSAR KESRTVDAAV LEEQVYQMLR 60 EWKAELNEPS PASSLQNDSL GAFSSDIYRL LHLCDEEDDA TSPFELPLPK SEPDVQNFQS 120 GDAIGFQEDS DVKPGSQEQN FSPVDQCKGS PAFRCLTTNL EPHQLDYNQF NLQLDLEHHY 180 FGGYNAVDVS GFYAHPISGF LPNICPSPAA FLGPKCALWD CPRPAQGSDW WLDYCSSFHA 240 TLALNEGPPG MTPVLRPGGI GLKDGLLFAA LSAKVQGKDV GIPECEGAAT AKSPWNAPEL 300 FDLSVLEGEN IREWLFFDKP RRAFESGNRK QRSLPDYSGR GWHESRKQVM DEFSGLKRSY 360 YMDPQPLNNY EWHLYEYEIN KCDACALYRL ELKLVDRKKT PRGKSANDSV SELQKQMGRL 420 TAEFPLDNRR TLKGRSKLSS KNGIGNLHSD PNQLASADKT SFDHGLGAPY GYLVENIGDF 480 YLK*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MRKVLKRNGC KSASHQFFKD RAKNRVDDLQ MVFSDLQSAR KESRTVDAAV LEEQVYQMLR  60
EWKAELNEPS PASSLQNDSL GAFSSDIYRL LHLCDEEDDA TSPFELPLPK SEPDVQNFQS  120
GDAIGFQEDS DVKPGSQEQN FSPVDQCKGS PAFRCLTTNL EPHQLDYNQF NLQLDLEHHY  180
FGGYNAVDVS GFYAHPISGF LPNICPSPAA FLGPKCALWD CPRPAQGSDW WLDYCSSFHA  240
TLALNEGPPG MTPVLRPGGI GLKDGLLFAA LSAKVQGKDV GIPECEGAAT AKSPWNAPEL  300
FDLSVLEGEN IREWLFFDKP RRAFESGNRK QRSLPDYSGR GWHESRKQVM DEFSGLKRSY  360
YMDPQPLNNY EWHLYEYEIN KCDACALYRL ELKLVDRKKT PRGKSANDSV SELQKQMGRL  420
TAEFPLDNRR TLKGRSKLSS KNGIGNLHSD PNQLASADKT SFDHGLGAPY GYLVENIGDF  480
YLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021765999.1	0.0	transcription factor VOZ1-like
Refseq	XP_021766000.1	0.0	transcription factor VOZ1-like
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0K9QIS6	0.0	A0A0K9QIS6_SPIOL; Uncharacterized protein
STRING	XP_010686387.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	AHYPO_015944-RA

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]