PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015965-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 301aa    MW: 32690.2 Da    PI: 10.3176
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015965-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31226283359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++dp+++++tYeg+H h+
  AHYPO_015965-RA 226 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAQDDPSMLIVTYEGDHSHP 283
                      99************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.7E-9201222IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33211284IPR003657WRKY domain
PROSITE profilePS5081130.687219285IPR003657WRKY domain
SuperFamilySSF1182904.71E-27221284IPR003657WRKY domain
SMARTSM007745.6E-38224284IPR003657WRKY domain
PfamPF031061.8E-27226283IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAVELMVGSY KSNPDTFAAR MEENAVREAT SAGLQSVAKL INLLQDVNSQ DYKAVADVAV  60
DRFKKVISIL DRNRTGHARF RRGPVDQPRA PPAAVVERKP LVLDSKPSIG SAFTRVVSSS  120
QIQRLPPLPQ QHSKMMDRKE CSTTINFSCS SGLMAATNSY ISSLTGDSDS LQPSSMSSGF  180
QITNLSQVSS AGKPPLSSSL KRKKSRVKRT VRVPAISLKM ADIPPDDYSW RKYGQKPIKG  240
SPHPRGYYKC SSVRGCPARK HVERAQDDPS MLIVTYEGDH SHPQSVTDAT VAAALVLESS  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21212282271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851375.11e-139probable WRKY transcription factor 7
SwissprotQ9STX04e-82WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0K9QJ791e-139A0A0K9QJ79_SPIOL; Uncharacterized protein
STRINGXP_009604893.11e-118(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.15e-63WRKY DNA-binding protein 7