PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015986-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 513aa MW: 55558.4 Da PI: 6.2011

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015986-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.3e-09	339	387	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq AHYPO_015986-RA 339 NSHSLAERVRREKISERMKFLQDLVPGC----SKATGKAVMLDEIINYVQSLQ 387 58***********************9....7779**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.06E-11	334	391	No hit	No description
SuperFamily	SSF47459	3.93E-17	334	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.504	336	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.9E-17	337	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	339	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-10	342	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MNMNDKDKLE LEKRNEEPLG YHPISLSADW RYDIPNFAKS SMGLVSSGNC MAVCGDAVGP 60 SCSSGSMVDS FGPKVWEHSV NTAPLGFSEM DVHNGPSVSD PLLMLKGGPF LPSMAGMVHH 120 SLSQFSTDSA FIERAARFSS FSGGNFADIL NPLGIHQSCN PYTRGEVMMQ GMQEVLSGNT 180 FKTLSGRLPH KSEACLADTS KDVSLPPERG AVELQKIDTA VERSNDEAKQ GVSMSGNDSD 240 EPEFSGGLAQ DEGVPLTVKD AKKRKRVNQV MEAEQANVNQ QQIGEAGKNN PEIQQKGQQN 300 STGAGNKPNG KHGKQGSPAS DSPKEEYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ 360 DLVPGCSKAT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRLDFNIER LLAKDQMFSA 420 RPGQSGLAFS SDISLPYPPL HSTQPPILPP GIPAVGNSSD ALQRVISSQI PNMGAYKEHA 480 LQLPNVWDGE LHNVVQMGFN ANAPLDNQET NC*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MNMNDKDKLE LEKRNEEPLG YHPISLSADW RYDIPNFAKS SMGLVSSGNC MAVCGDAVGP  60
SCSSGSMVDS FGPKVWEHSV NTAPLGFSEM DVHNGPSVSD PLLMLKGGPF LPSMAGMVHH  120
SLSQFSTDSA FIERAARFSS FSGGNFADIL NPLGIHQSCN PYTRGEVMMQ GMQEVLSGNT  180
FKTLSGRLPH KSEACLADTS KDVSLPPERG AVELQKIDTA VERSNDEAKQ GVSMSGNDSD  240
EPEFSGGLAQ DEGVPLTVKD AKKRKRVNQV MEAEQANVNQ QQIGEAGKNN PEIQQKGQQN  300
STGAGNKPNG KHGKQGSPAS DSPKEEYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ  360
DLVPGCSKAT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRLDFNIER LLAKDQMFSA  420
RPGQSGLAFS SDISLPYPPL HSTQPPILPP GIPAVGNSSD ALQRVISSQI PNMGAYKEHA  480
LQLPNVWDGE LHNVVQMGFN ANAPLDNQET NC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021718309.1	0.0	transcription factor bHLH49-like isoform X1
Refseq	XP_021718310.1	0.0	transcription factor bHLH49-like isoform X1
TrEMBL	A0A0K9R4Y3	0.0	A0A0K9R4Y3_SPIOL; Uncharacterized protein
STRING	XP_010681176.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-101	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_015986-RA