PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015995-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 85aa MW: 10105.5 Da PI: 11.4366

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015995-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.1	3.2e-12	1	46	10	55
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +NRe+ArrsR RKk +i eL v +L +eN++L+++l++ ++ AHYPO_015995-RA 1 MVSNRESARRSRMRKKRQINELWSQVLQLRNENQELIQTLNHASES 46 579**********************************888876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57959	1.06E-10	1	45	No hit	No description
Pfam	PF00170	1.3E-9	1	46	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.33E-9	1	48	No hit	No description
PROSITE profile	PS50217	8.841	1	57	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.5E-10	2	67	No hit	No description
SMART	SM00338	0.0038	3	56	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MVSNRESARR SRMRKKRQIN ELWSQVLQLR NENQELIQTL NHASESHNKA VQENSMLKQE 60 TSNLRQIMFT YMQHGRLTVL RTHD*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021717866.1	3e-32	basic leucine zipper 43-like
Swissprot	Q9FMC2	8e-21	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A0J8C902	5e-26	A0A0J8C902_BETVU; Uncharacterized protein
STRING	XP_010681298.1	8e-27	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	1e-24	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	AHYPO_015995-RA

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]