PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_016011-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 322aa MW: 35905.4 Da PI: 6.8012

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_016011-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.2	6.1e-08	215	255	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L AHYPO_016011-RA 215 ARQRRERISERLRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 255 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.218	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-13	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.18E-11	212	260	No hit	No description
SuperFamily	SSF47459	7.46E-14	212	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-12	214	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-5	215	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MMNNPLSGLI IPNNNITQSQ PLNPSSSANS LDQQSLECLL SGTNSINTDN ASVEDNDDGI 60 SMLFSNPKNN NFLNFSSNND NNNNNNNNNN NNNNNNNNNN NNNNNNNXDN NNNNNNNNNN 120 NNNNNNNNNN NNNNNNNYPP FSINTNTNSS SNISFQQGSS SGSSVDEPDA EAIQQMKEMI 180 YRAAAFRPVN FGVEIVEKPK RKNVRISSDP QTVAARQRRE RISERLRVLQ KLVPGGSKMD 240 TASMLDEAAN YLKFLRNQVK ALEALGNNKF DHFQFSPNST TNHVFNPINL QFSSLPYHPM 300 QPTLTTQFSL QNPNNQKLKN F*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	220	RQRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690114.1	1e-120	PREDICTED: transcription factor bHLH87
Refseq	XP_019107448.1	1e-120	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	3e-69	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A0K9RKT1	1e-107	A0A0K9RKT1_SPIOL; Uncharacterized protein
STRING	XP_010690114.1	1e-119	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	6e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_016011-RA

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]