PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_016034-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 178aa MW: 19161.5 Da PI: 8.574

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_016034-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	1e-38	22	80	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++lkcprCdstntkfCyynny+lsqPr++Ck+C+ryWtkGGalrn+P+Ggg+rk k AHYPO_016034-RA 22 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHYCKSCKRYWTKGGALRNIPIGGGSRKITK 80 57899**************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-28	18	80	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	24	79	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.481	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MQDPSSLTAA AFSQLKTPQF PEQEQLKCPR CDSTNTKFCY YNNYNLSQPR HYCKSCKRYW 60 TKGGALRNIP IGGGSRKITK PSGVGVGVES FTSLLGLASE GQFNNLLIEN LGSNGLRLGQ 120 GDGSGQNPGL EMLQENKYNG STSSEGLMMG GVDLSCWNGN SNGWPDLAIY TPGSKFK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021732783.1	1e-80	dof zinc finger protein DOF3.1-like
TrEMBL	A0A0K9RHW0	1e-69	A0A0K9RHW0_SPIOL; Uncharacterized protein
STRING	XP_010690053.1	4e-73	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-40	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	AHYPO_016034-RA