PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016200-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB
Protein Properties Length: 233aa    MW: 27198.9 Da    PI: 7.12
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016200-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091754148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l+++++ +G g          ++Rt+k+c++rw++yl
  AHYPO_016200-RA 17 KGPWTMEEDYILINYIANHGEG----------LKRTGKSCRLRWLNYL 54
                     79******************99..........68************97 PP
2Myb_DNA-binding55.21.6e-1760103146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  AHYPO_016200-RA  60 RGNITPDEELLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 103
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-151057IPR009057Homeodomain-like
PROSITE profilePS512949.6191254IPR017930Myb domain
SuperFamilySSF466897.26E-2615101IPR009057Homeodomain-like
SMARTSM007179.9E-51656IPR001005SANT/Myb domain
PfamPF002493.2E-81754IPR001005SANT/Myb domain
CDDcd001671.00E-51954No hitNo description
PROSITE profilePS5129425.43355109IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2558110IPR009057Homeodomain-like
SMARTSM007172.3E-1559107IPR001005SANT/Myb domain
PfamPF002492.1E-1660103IPR001005SANT/Myb domain
CDDcd001672.09E-1264103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDKKASQVSS LDNEVRKGPW TMEEDYILIN YIANHGEGLK RTGKSCRLRW LNYLRPDVRR  60
GNITPDEELL IMELHAKWGN RWSKIAKHLP GRTDNEIKNY WRTRIQKHLK QAESSTNSRH  120
DQISLSYSSD NNNNHEIIPT TTNTISALST NNNIQNYVVS SSNDHHPPYL PSMDNPSSYH  180
HHHHHHHHHH EQGMDQISNI GPPHQLHPDQ SFNWETTEED LWSIQLFNTY NN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-221110921128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677862.15e-88PREDICTED: myb-related protein 305
SwissprotP813917e-66MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A0J8CCE71e-86A0A0J8CCE7_BETVU; Uncharacterized protein
STRINGXP_010677862.12e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-65myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]