PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_016202-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB

Protein Properties

Length: 902aa MW: 102681 Da PI: 8.5561

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_016202-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.2	2.8e-11	397	442	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT +Ed+ l+ + ++ G ++W+ Ia+++g++Rt+ qc r+q AHYPO_016202-RA 397 RDNWTSDEDKHLLLLLQKNGIHNWSYIAEKLGTNRTPFQCLVRYQR 442 789**************************************99995 PP
2	Myb_DNA-binding	42.2	1.8e-13	451	496	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT++Ed +l av+ +G +W ++a+ + gRt+ qc +rw+k l AHYPO_016202-RA 451 RVWTEDEDAQLCSAVEAFGESNWQAVASVFE-GRTGTQCSNRWRKTL 496 57***************************.**********975 PP
3	Myb_DNA-binding	52	1.7e-16	504	549	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+t+Ed++l av+++G ++W++Ia+ ++ gRt qc++rw ++l AHYPO_016202-RA 504 GRWSTDEDKRLRVAVTLFGYKSWHRIAQFVP-GRTQVQCRERWVNVL 549 8****************************.*********9975 PP
4	Myb_DNA-binding	52.7	9.8e-17	556	599	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd +l++a+ ++G W++Ia +++ Rt++qc+ rw k+ AHYPO_016202-RA 556 GEWTKEEDMKLKEAISEYGYC-WSKIAGCVP-LRTDNQCRRRWKKL 599 79***************99.*****.9********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.6E-4	298	393	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-11	301	318	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.435	357	391	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.4E-11	364	404	IPR009057	Homeodomain-like
CDD	cd00167	0.00394	367	390	No hit	No description
SuperFamily	SSF46689	5.74E-18	372	441	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-7	396	446	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	9.558	396	444	IPR017877	Myb-like domain
Pfam	PF00249	1.2E-8	397	442	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-15	405	452	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.04E-18	430	496	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.234	445	500	IPR017930	Myb domain
SMART	SM00717	8.1E-13	449	498	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-12	451	495	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-17	453	499	IPR009057	Homeodomain-like
CDD	cd00167	1.36E-10	453	496	No hit	No description
SuperFamily	SSF46689	2.25E-27	501	596	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.973	501	549	IPR017930	Myb domain
SMART	SM00717	1.3E-12	502	551	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-14	504	549	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-21	504	554	IPR009057	Homeodomain-like
CDD	cd00167	3.12E-11	505	549	No hit	No description
PROSITE profile	PS51294	24.185	550	604	IPR017930	Myb domain
SMART	SM00717	7.3E-17	554	602	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-20	555	599	IPR009057	Homeodomain-like
Pfam	PF00249	3.0E-15	556	599	IPR001005	SANT/Myb domain
CDD	cd00167	1.91E-13	557	600	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MGKYDFVEEL SGSDNDDLLQ EEIQTLSREC FPSNNSDGAS IPATACSVTG GRYLSEDEDD 60 DDDDDDDMEL VRSIKEQYGI EVDISKPLSL KPLISLPPAS SDDDDDDFET LRAIQKRFSQ 120 YGDDKSTDAL ECKNDNCVDK TLHEDVIATS LGSEFVYVHG DDLGENTCDV PQNVETSSCT 180 SNFPKSAQTF VEAIKKNRSC QKFIRNKMLH IEAKMEANRA LQKRLKTLRD FQVQCKKTIG 240 RALSQKQDSR VQLISVPKQK PNIKGSEKNV SAIYYGPLEN SHVALYKTTM KNYPLLFQRE 300 KWSKNEIRAL EKEIIKQFQE RLFQTSADLL SNFDDHGLAN GVDDMISSIT NLDITPEIIQ 360 EFSRKVDWNK LASRLPRRSG VECEARWLNY ENCLINRDNW TSDEDKHLLL LLQKNGIHNW 420 SYIAEKLGTN RTPFQCLVRY QRSLNASIMK RVWTEDEDAQ LCSAVEAFGE SNWQAVASVF 480 EGRTGTQCSN RWRKTLLPAR QRVGRWSTDE DKRLRVAVTL FGYKSWHRIA QFVPGRTQVQ 540 CRERWVNVLD PSLKHGEWTK EEDMKLKEAI SEYGYCWSKI AGCVPLRTDN QCRRRWKKLF 600 PNEVPLLKAA KHIKEVALIS NFVDRESERP ALGMNDFVPL PITNSANETE KEKISRTRKR 660 KGIAPNTQSI SHLKGVASRK RKRNDKSSGD ANNCNDACST DGYGIQENKK FSAIRSDSKK 720 KKHCGNLNTT RKPLKSGKST HSHEGNAEET NCRNMPIKTR SRRPQGNSKK QIGDGIQADL 780 SNMVTVARNK RSSQLQLRSS FAETSFGDDC EQTELRDGNE THSMDTAGSS KEKTVKKKKK 840 RELHADQSLE WEDLPLSILL KKDIAHKERS ISNLTSKPPV KPPIYLTYAR RNRNSNLENS 900 T*

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MGKYDFVEEL SGSDNDDLLQ EEIQTLSREC FPSNNSDGAS IPATACSVTG GRYLSEDEDD  60
DDDDDDDMEL VRSIKEQYGI EVDISKPLSL KPLISLPPAS SDDDDDDFET LRAIQKRFSQ  120
YGDDKSTDAL ECKNDNCVDK TLHEDVIATS LGSEFVYVHG DDLGENTCDV PQNVETSSCT  180
SNFPKSAQTF VEAIKKNRSC QKFIRNKMLH IEAKMEANRA LQKRLKTLRD FQVQCKKTIG  240
RALSQKQDSR VQLISVPKQK PNIKGSEKNV SAIYYGPLEN SHVALYKTTM KNYPLLFQRE  300
KWSKNEIRAL EKEIIKQFQE RLFQTSADLL SNFDDHGLAN GVDDMISSIT NLDITPEIIQ  360
EFSRKVDWNK LASRLPRRSG VECEARWLNY ENCLINRDNW TSDEDKHLLL LLQKNGIHNW  420
SYIAEKLGTN RTPFQCLVRY QRSLNASIMK RVWTEDEDAQ LCSAVEAFGE SNWQAVASVF  480
EGRTGTQCSN RWRKTLLPAR QRVGRWSTDE DKRLRVAVTL FGYKSWHRIA QFVPGRTQVQ  540
CRERWVNVLD PSLKHGEWTK EEDMKLKEAI SEYGYCWSKI AGCVPLRTDN QCRRRWKKLF  600
PNEVPLLKAA KHIKEVALIS NFVDRESERP ALGMNDFVPL PITNSANETE KEKISRTRKR  660
KGIAPNTQSI SHLKGVASRK RKRNDKSSGD ANNCNDACST DGYGIQENKK FSAIRSDSKK  720
KKHCGNLNTT RKPLKSGKST HSHEGNAEET NCRNMPIKTR SRRPQGNSKK QIGDGIQADL  780
SNMVTVARNK RSSQLQLRSS FAETSFGDDC EQTELRDGNE THSMDTAGSS KEKTVKKKKK  840
RELHADQSLE WEDLPLSILL KKDIAHKERS ISNLTSKPPV KPPIYLTYAR RNRNSNLENS  900
T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-27	367	596	4	155	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-27	367	596	4	155	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021858427.1	0.0	uncharacterized protein LOC110797633
Refseq	XP_021858428.1	0.0	uncharacterized protein LOC110797633
Refseq	XP_021858429.1	0.0	uncharacterized protein LOC110797633
Refseq	XP_021858430.1	0.0	uncharacterized protein LOC110797633
TrEMBL	A0A0K9R9D0	0.0	A0A0K9R9D0_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010674389.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-165	myb domain protein 4r1

Link Out ? help Back to Top
Phytozome	AHYPO_016202-RA