PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016228-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 265aa    MW: 28405 Da    PI: 10.0545
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016228-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-063962225
                     -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                     k ++C+ f+ t  C++G++C+F H
  AHYPO_016228-RA 39 KSKPCSKFFSTIGCQFGEKCHFQH 62
                     7789*******************9 PP
2zf-CCCH31.53e-10105130227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC++f     Ck+Gd+C+FaHg+
  AHYPO_016228-RA 105 KTKLCKTFNTAEGCKFGDKCHFAHGE 130
                      9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0983765IPR000571Zinc finger, CCCH-type
SMARTSM003566.63764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-53863IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-43962IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-63962IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92103131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8104134IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7105130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-14105133IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.7E-14166241IPR004088K Homology domain, type 1
SMARTSM003226.1E-11170240IPR004087K Homology domain
PROSITE profilePS5008414.152171235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.2E-16173241IPR004088K Homology domain, type 1
CDDcd001058.14E-13173236No hitNo description
PfamPF000131.7E-9174237IPR004088K Homology domain, type 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEFGSHRKRN RPDFVANGNG GIKKSRPELE SFPTGVGSKS KPCSKFFSTI GCQFGEKCHF  60
QHYIPGGYKA VSQMMNLGSA QVPPPARNVP ALPSHSDIAD SQGGKTKLCK TFNTAEGCKF  120
GDKCHFAHGE WELGRAPVSS HEDRHEVGHM GSRMRGRMEL APATVSDFGV SASAKISIDA  180
AHVGAVIGVS GSNSKQISRV TGVKLAIRDH DSDSTKRNVE LEGTFDQIKQ ASSMVEELIR  240
NTKLVQGHRF GHGPGGSNNK TKAM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673537.11e-113PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1
SwissprotQ7F8R01e-79C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9S1U11e-106A0A0K9S1U1_SPIOL; Uncharacterized protein
STRINGXP_010673537.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-50C3H family protein