PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_016271-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 140aa MW: 15556.7 Da PI: 6.7477

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_016271-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	63.1	7.2e-20	7	49	1	43
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvl 43 +Ca+Ck+lrr+CakdC++apyfp+++p++fa vhk+FGasnv+ AHYPO_016271-RA 7 PCASCKLLRRRCAKDCIFAPYFPSDDPQRFALVHKVFGASNVM 49 7****************************************96 PP
2	DUF260	42	2.6e-13	46	87	59	100
DUF260 59 sslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 s ++yeA+ar+rdPvyG+vg i+ lq+q+++l+ +la++++e AHYPO_016271-RA 46 SNVMYEANARIRDPVYGCVGAISMLQNQVSELQMQLAMAQAE 87 679**********************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.528	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-18	7	49	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-11	48	85	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MGSGSSPCAS CKLLRRRCAK DCIFAPYFPS DDPQRFALVH KVFGASNVMY EANARIRDPV 60 YGCVGAISML QNQVSELQMQ LAMAQAEIMS IQMQNQQTTP NFIHNQIAEF ADDKSIILAT 120 ANNFNNLQHY LNDFATSNAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	2	89	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	2	89	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685903.2	3e-75	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-55	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0K9QTD4	3e-72	A0A0K9QTD4_SPIOL; Uncharacterized protein
STRING	EOY34594	7e-60	(Theobroma cacao)
STRING	POPTR_0001s28840.1	3e-60	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-58	LBD family protein

Link Out ? help Back to Top
Phytozome	AHYPO_016271-RA

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]