PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016296-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 396aa    MW: 44192 Da    PI: 4.8829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016296-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19190240256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  AHYPO_016296-RA 190 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 240
                      59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-34189249No hitNo description
SMARTSM003801.1E-40190253IPR001471AP2/ERF domain
PROSITE profilePS5103222.906190247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32190248IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22190248IPR016177DNA-binding domain
PRINTSPR003677.5E-11191202IPR001471AP2/ERF domain
PfamPF008472.9E-12191240IPR001471AP2/ERF domain
PRINTSPR003677.5E-11213229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMGETENMAK MKWDRDKGKD THQQPWMQVF DEASMAATSA SGPPLKKIRS PERQQIPADW  60
QNSSNPDSST LQYDNLASKL TFPFAFEGSS NQTNPIPFSL PNPQLIPQNQ HPQTMISFDQ  120
GYSGPGYPYQ NPYFPMGSSQ QMQQLQYWSE ALNLSPRGKM MMMNRFSAQG FGQKMAQGGN  180
PLPHISTTKL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF DTAEDAALAY DREAFKLRGE  240
NARLNFPELF LNKGGAQGNT APQEVEITPP QPPPPPPHSV AEVEQEESSG ATSSDVTVMS  300
EVAQGGSNES SELAWKEMTE AWFNAIPAGW GPGSPVWDDV DPNSFLLQQN ISFGSNLNPQ  360
NDQEQQNKHQ EMFGSSSSFS PTSCPMRPFF SQDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21189247160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858832.11e-144ethylene-responsive transcription factor ERF054-like
TrEMBLA0A0K9QL681e-143A0A0K9QL68_SPIOL; Uncharacterized protein
STRINGXP_010689679.11e-141(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-56ERF family protein