PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016515-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 192aa    MW: 22469.1 Da    PI: 8.7094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016515-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1978127255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +   r++lg+f taeeAa+ +++a+ +++g
  AHYPO_016515-RA  78 KYRGVRQRP-WGKWAAEIRDP-----HraIRVWLGTFQTAEEAAREYDRAAVRFRG 127
                      8********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-3278136IPR001471AP2/ERF domain
SMARTSM003809.6E-3678141IPR001471AP2/ERF domain
CDDcd000181.02E-3278137No hitNo description
SuperFamilySSF541713.33E-2278137IPR016177DNA-binding domain
PfamPF008474.2E-1278127IPR001471AP2/ERF domain
PROSITE profilePS5103224.44778135IPR001471AP2/ERF domain
PRINTSPR003672.2E-117990IPR001471AP2/ERF domain
PRINTSPR003672.2E-11101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNERPEQEMN IMVQALKHVI NGGQQRQIDN GSHSILQEIQ RLPQFSTCST TSTATCLTLS  60
PNKNSNEKQR KRKYNRNKYR GVRQRPWGKW AAEIRDPHRA IRVWLGTFQT AEEAAREYDR  120
AAVRFRGPRA KLNFPLSDYL PQLEESQQQQ HQQEQFGDEI KEERFVEIND REEIVNWMNG  180
LIDDNPPSIH L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2479136664ATERF1
3gcc_A4e-2479136664ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666622.15e-67PREDICTED: ethylene-responsive transcription factor ERF098
TrEMBLA0A0J8B8511e-65A0A0J8B851_BETVU; Uncharacterized protein
STRINGXP_010666622.12e-66(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-21redox responsive transcription factor 1