PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016561-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 351aa    MW: 38748 Da    PI: 10.3616
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016561-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.25.9e-32284341359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  AHYPO_016561-RA 284 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 341
                      9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.9E-18235280IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.2E-34270342IPR003657WRKY domain
PROSITE profilePS5081130.458277343IPR003657WRKY domain
SuperFamilySSF1182901.44E-27280342IPR003657WRKY domain
SMARTSM007741.3E-39282342IPR003657WRKY domain
PfamPF031069.9E-28284341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MIYILKMEGV EEANKLAVES CHRVLSIISQ PHQDQTHLRN LDAETQQAVS KFKRVVSLLS  60
NSLGHGRARI AKKNRTNSIP PSILLDSSNG LKIESSNQPI KALQLLKTNL NEGLIQENGS  120
TSGKSCLSLG GNLSLEMSSS GKTPFQLANP NSSANYQLFQ QQKLHLQQVQ HQQRMKQHAE  180
MLFRRSNSGI NLNFDNSSCT QTMSSSRTLF SSLSVDGSVA SLDGSGFNQL LSQHRKKCSG  240
RGEDGSLKCG TSGKCHCSKK RKHRVKRSIK VPAISNKLAD IPPDEYSWRK YGQKPIKGSP  300
HPRGYYKCSS MRGCPARKHV ERCLEDPSML IVTYEGEHNH PRLPSQSANA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21275344775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679182.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-106WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0K9S1G11e-169A0A0K9S1G1_SPIOL; Uncharacterized protein
STRINGXP_010679182.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-100WRKY DNA-binding protein 21