PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016578-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 200aa    MW: 22505.7 Da    PI: 7.9557
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016578-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-052951123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H++ H
  AHYPO_016578-RA 29 YTCSFCKREFRSAQALGGHMNIH 51
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-72655No hitNo description
Gene3DG3DSA:3.30.160.609.0E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.6E-72852IPR007087Zinc finger, C2H2
SMARTSM003550.00422951IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1982956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEKTILSNNN YNKFDKDYPY GYPWPPRYYT CSFCKREFRS AQALGGHMNI HRRDRARLRE  60
LSPSNTNNNN PLSSNNSDHN PNPNPNPNPN PNPNPNFNPN VNFSTSSSST NTYSQQHSLV  120
SLSLSSIPPS TKNGCEGDSK GVFGKRKNMS SDQEIRVLES NNINNSSIKE VVRLDLELCL  180
REAKEEENGE VDLELRLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-132451229superman protein
2l1o_A2e-132451229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2463931e-32AB246393.1 Silene latifolia SlSUP mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021768589.12e-36transcriptional regulator SUPERMAN-like
TrEMBLC4B4C93e-43C4B4C9_SILLA; Uncharacterized protein SlSUP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-15C2H2 family protein