PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016625-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 382aa    MW: 43977.4 Da    PI: 6.5893
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016625-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.3e-17162260199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+kvlt  dv+k+  + + ++  +e+        +    ++ l++ d +g+ We+ +  + + + +vlt+GW++Fv+a++L  gD++vF+l++ 
  AHYPO_016625-RA 162 FIKVLTEQDVSKKF-IEVLNPL-REYifslipeTL--SHGILLSFIDIHGKIWEIMF--KSRNSFHVLTDGWNDFVRAKNLTPGDSIVFMLKK- 248
                      78888888888887.4444443.455675554322..27789***************..777777*************************987. PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      s+ +++++++r+
  AHYPO_016625-RA 249 STLQYYIGIRRA 260
                      99999****996 PP
2Auxin_resp39.32.7e-14275360283
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeteds.serrl.sGtvv.gvsd.ldpvrWpnSkWrsLk 83 
                      +++++ ++ FevvY+P  + +eFvv+ ekv +al+v++   m +++a++te + +++r+ sG    ++    + ++ p+  Wr+L+
  AHYPO_016625-RA 275 IQKTRDMKKFEVVYYPNLGLPEFVVPKEKVDAALNVPWRREMPVRIAYDTEIArPRKRWhSGRLLnDIDRnNNMINSPDYWWRVLQ 360
                      567778899******************************************77256677888765144431345677777888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-18157257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-16159261IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-16161259No hitNo description
PfamPF023621.6E-13162260IPR003340B3 DNA binding domain
SMARTSM010197.1E-10162261IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266200261IPR003340B3 DNA binding domain
PfamPF065071.0E-11277360IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MASSNQPEKD QEILKAANHE PEEGLVDDAS SMAAPSNNEQ QVIPESWQAC AGSLVDIPKK  60
DSLVYYFPQG HMEHVQEVLL HYPVRYGCCL CRVIDVSFLA HPETDQVFVK FLLHPISIPN  120
PISFPNDPNP ISIPNTNRLE HSNPNRILIN PFTIPNDDFV SFIKVLTEQD VSKKFIEVLN  180
PLREYIFSLI PETLSHGILL SFIDIHGKIW EIMFKSRNSF HVLTDGWNDF VRAKNLTPGD  240
SIVFMLKKST LQYYIGIRRA VVNTGTGPKD VEDAIQKTRD MKKFEVVYYP NLGLPEFVVP  300
KEKVDAALNV PWRREMPVRI AYDTEIARPR KRWHSGRLLN DIDRNNNMIN SPDYWWRVLQ  360
VQWDVSRAYL KKKLSPWEVE V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A4e-28143801353Auxin response factor 1
4ldw_A4e-28143801353Auxin response factor 1
4ldw_B4e-28143801353Auxin response factor 1
4ldx_A4e-28143801353Auxin response factor 1
4ldx_B4e-28143801353Auxin response factor 1
4ldy_A4e-28143801353Auxin response factor 1
4ldy_B4e-28143801353Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-39auxin response factor 17