PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016697-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 584aa    MW: 65753.5 Da    PI: 6.1765
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016697-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.8e-24119220199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+r++++r++lt+GW++Fv +++L +gD++vF   ++
  AHYPO_016697-RA 119 FSKVLTASDTSTHGGFSVLRKHANEClppldmtQ--QTPTQELVAKDLHGYVWRFKHIFRGQPRRHLLTTGWSHFVTSKRLVAGDSFVFL--RE 208
                      88****************************9643..445569************************************************..55 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+v+r+
  AHYPO_016697-RA 209 ENGALRVGVRRA 220
                      88999****996 PP
2Auxin_resp100.13e-33245324183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t++ F v+Y+Pr+  s+F++ ++k+++++++   vGmRfkm+fe+ed +err++Gt+vgv dl+p +W+nS+WrsLk
  AHYPO_016697-RA 245 ASHAVTTNTFFVVYYKPRT--SQFIIGLNKYLESVNNARKVGMRFKMRFEGEDTPERRFTGTIVGVDDLSP-QWKNSRWRSLK 324
                      689***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-37111248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-41112234IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-20117219No hitNo description
PfamPF023628.4E-22119220IPR003340B3 DNA binding domain
SMARTSM010191.1E-22119221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605119221IPR003340B3 DNA binding domain
PfamPF065071.6E-30245324IPR010525Auxin response factor
PROSITE profilePS5174517.67474563IPR000270PB1 domain
SuperFamilySSF542773.58E-10486547No hitNo description
PfamPF023091.9E-6518555IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MCPAVKDSGG DDVLYPELWK ACAGPLVEIP SVGERVYYFP QGHIEQLEAS TNEEFNQRIQ  60
MFNLPSKILC SVLDVVLLAE KETDEVYTHI TLMPETDQTE PLKPDPCPPE PPRPAIRSFS  120
KVLTASDTST HGGFSVLRKH ANECLPPLDM TQQTPTQELV AKDLHGYVWR FKHIFRGQPR  180
RHLLTTGWSH FVTSKRLVAG DSFVFLREEN GALRVGVRRA ARQRSSTPSS VMSSQSMHLG  240
VLATASHAVT TNTFFVVYYK PRTSQFIIGL NKYLESVNNA RKVGMRFKMR FEGEDTPERR  300
FTGTIVGVDD LSPQWKNSRW RSLKVQWDEA TSIMRPNSVS PWEIEPFGSS VLSGTSDPVV  360
MNKRPRSSVE IPGHASMAFM DSTPRNPFPD IVKGETIENQ KKPETVASYW LFGIDLMKPS  420
RPILRQDEFV QEPNVTGGHI EEMGRCFDSP ADSEQRSDLS KASQDKRQVL QLASPRDKQS  480
NHSSTRMDLT ILESYDELID ELEELFSIKG ELRPRDKWEI VFTDNEGDMM LVGDDPWPEF  540
CSMAKRIYIC SSHEVKKIRL GSKLQSCSLE GDGTVVSAES SGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1611234917357Auxin response factor 1
4ldw_A1e-1611234917357Auxin response factor 1
4ldw_B1e-1611234917357Auxin response factor 1
4ldx_A1e-1611234917357Auxin response factor 1
4ldx_B1e-1611234917357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695583.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0J8B8H10.0A0A0J8B8H1_BETVU; Auxin response factor
STRINGXP_010695583.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9