PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016822-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TCP
Protein Properties Length: 288aa    MW: 32448.1 Da    PI: 10.1146
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016822-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.23.3e-43531842136
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                      +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++ +aik+l + s +s      + ++  +++++++ ++ ks+
  AHYPO_016822-RA  53 TGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFNKSRAAIKDLSEKSCTSL--IiPNYEKFDEKNEENKCEKIKSS 144
                      79**************************************************************33333..22222222222222222444444 PP

              TCP  95 akskksqksaasalnlakesrakarararertrekmriknkl 136
                      +   k+  ++++  ++ +e+r++arararert+ek ++ nk+
  AHYPO_016822-RA 145 K--IKNGGKKEKIMSKLNEKRKEARARARERTKEKLKMMNKK 184
                      3..33344444446777799*****************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3753179IPR005333Transcription factor, TCP
PROSITE profilePS5136936.71855113IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.401160177IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLDNDDLFLD TILLPYHPPP PPPPQPPSPT TSKKGLDKGM KKSGGSHSKG RKTGKKDRHS  60
KIYTAQGPRD RRMRLSLQIA RKFFDLQDML GFDKASKTIE WLFNKSRAAI KDLSEKSCTS  120
LIIPNYEKFD EKNEENKCEK IKSSKIKNGG KKEKIMSKLN EKRKEARARA RERTKEKLKM  180
MNKKLDLGKE KNPNEESIVQ EKVLEDQMAC VGIVEKFLGA SSTSSMVNYN GQDNDLSLGF  240
SMEYPRSESG RSNGGFMEGT LEYVHQVDQV GPNPNCGFMG RGFNQGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1360113154Putative transcription factor PCF6
5zkt_B8e-1360113154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726962.18e-74transcription factor TCP12-like
SwissprotA0AQW45e-31TCP12_ARATH; Transcription factor TCP12
TrEMBLA0A067G3Q74e-40A0A067G3Q7_CITSI; Uncharacterized protein
TrEMBLA0A2H5P3V37e-40A0A2H5P3V3_CITUN; Uncharacterized protein
STRINGXP_010681415.17e-62(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-30TCP domain protein 12