PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016830-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 130aa    MW: 13363.9 Da    PI: 9.2393
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016830-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like21.36.1e-071193553
          G2-like 35 lmkvkgLtlehvkSHLQkY 53
                     +m+ + Lt+++vkSHLQkY
  AHYPO_016830-RA  1 MMNPPPLTNDEVKSHLQKY 19
                     699999************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-5119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MMNPPPLTND EVKSHLQKYP PPTRRPSSTV PNNTNPPPPQ FVVVGGIWVP PPPPPAGGTT  60
ATITTPSNPP PPIATMATPP TTMHPSSAHK PSSHSISEER AASHSDGGVH SNSPATSPPP  120
HTTTASHSH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021754557.19e-32transcription factor HHO3-like
TrEMBLA0A0J8B7X92e-29A0A0J8B7X9_BETVU; Uncharacterized protein
STRINGXP_010695844.13e-30(Beta vulgaris)