PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_016913-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Nin-like

Protein Properties

Length: 837aa MW: 93580 Da PI: 7.8642

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_016913-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.8e-29	511	561	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+isl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ AHYPO_016913-RA 511 QKTISLDVLRQYFSGSLKDAAKSIGVCPTTLKRICRQHGIARWPSRKIKKV 561 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.814	500	581	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-25	513	561	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.83E-23	733	825	No hit	No description
SMART	SM00666	1.1E-20	740	823	IPR000270	PB1 domain
PROSITE profile	PS51745	21.372	740	823	IPR000270	PB1 domain
CDD	cd06407	1.32E-36	741	820	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-21	741	821	No hit	No description
Pfam	PF00564	7.2E-15	742	820	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MDQLLDEGCW LQQTSDKSNI LQSSLGLGLG PGQIQGQGQD QGSEPSTSHS LNLCYPPYTL 60 FPSCSIKDRL VKAIYNLKDM NRDKDVLIQL WVPIKKGLHI YLTTVEQPYF YQDSSKRLHN 120 YRGVSEKYEF LVDEDTKQAL GSFPGRVFLG KAPEWTPDVR LFREEEYPRS VYAFKYDVRG 180 SIALPIFEKD NGHAVGVVEI IMTTDKFDYR PQVECTVHLR SSEIFNTPQQ AEKVCYEVVQ 240 FEIQNVVRTV CDTFDLPLAQ TWAPCSQQRK GGCWHSDNNA TCVSIIESAC YVRDQRVEEF 300 HKACTDHHLL KKRGGIVGKA FETNQPCYAT DVTEFSKVEY PLSHYAKMCG LYGAVAVKVH 360 SIYHEVNDYV LELYLPSNIQ EKGLAFHARI WQTVATVIHQ NCRFLQSVTG QDVGEQAKET 420 SWVSQMIHPK NKGKEVVVSV EFGKVEPSKG FEVTNWSENE PSLQLGQALS DEDLYCDNSE 480 SKGVSGSCLS SVGRLPVGCR KSGEKRRTKT QKTISLDVLR QYFSGSLKDA AKSIGVCPTT 540 LKRICRQHGI ARWPSRKIKK VDHSLRKLQL VIDSVEGTEG AIRLSSFYTN FPDLNSPNTQ 600 PKSNQVSSIN LNNQPKQQLT TEPEGSLFPS GGATVSNSSS STSSSQTSTS SYCFSSGAKL 660 TSSPVRTIVS ESKEASFIEV PGRSLKRARS EAELQVLTKK RANQILERSQ RNKTLAEHPL 720 FETLPPLLVT KSLHSREAGL FRAKVTFGEE KVRFTILPNM GFQDVQQEIA KRFSLEDLSK 780 ICIKYLDDDK EWILLTCNAD LEECIDIHKS SRSHTIKLAV LPLSGLAGSF GSCGLS*

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MDQLLDEGCW LQQTSDKSNI LQSSLGLGLG PGQIQGQGQD QGSEPSTSHS LNLCYPPYTL  60
FPSCSIKDRL VKAIYNLKDM NRDKDVLIQL WVPIKKGLHI YLTTVEQPYF YQDSSKRLHN  120
YRGVSEKYEF LVDEDTKQAL GSFPGRVFLG KAPEWTPDVR LFREEEYPRS VYAFKYDVRG  180
SIALPIFEKD NGHAVGVVEI IMTTDKFDYR PQVECTVHLR SSEIFNTPQQ AEKVCYEVVQ  240
FEIQNVVRTV CDTFDLPLAQ TWAPCSQQRK GGCWHSDNNA TCVSIIESAC YVRDQRVEEF  300
HKACTDHHLL KKRGGIVGKA FETNQPCYAT DVTEFSKVEY PLSHYAKMCG LYGAVAVKVH  360
SIYHEVNDYV LELYLPSNIQ EKGLAFHARI WQTVATVIHQ NCRFLQSVTG QDVGEQAKET  420
SWVSQMIHPK NKGKEVVVSV EFGKVEPSKG FEVTNWSENE PSLQLGQALS DEDLYCDNSE  480
SKGVSGSCLS SVGRLPVGCR KSGEKRRTKT QKTISLDVLR QYFSGSLKDA AKSIGVCPTT  540
LKRICRQHGI ARWPSRKIKK VDHSLRKLQL VIDSVEGTEG AIRLSSFYTN FPDLNSPNTQ  600
PKSNQVSSIN LNNQPKQQLT TEPEGSLFPS GGATVSNSSS STSSSQTSTS SYCFSSGAKL  660
TSSPVRTIVS ESKEASFIEV PGRSLKRARS EAELQVLTKK RANQILERSQ RNKTLAEHPL  720
FETLPPLLVT KSLHSREAGL FRAKVTFGEE KVRFTILPNM GFQDVQQEIA KRFSLEDLSK  780
ICIKYLDDDK EWILLTCNAD LEECIDIHKS SRSHTIKLAV LPLSGLAGSF GSCGLS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021867276.1	0.0	protein NLP2-like
TrEMBL	A0A0K9QYB0	0.0	A0A0K9QYB0_SPIOL; Uncharacterized protein
STRING	XP_010690230.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_016913-RA