PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016924-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 230aa    MW: 24902.3 Da    PI: 4.5012
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016924-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-183989155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  AHYPO_016924-RA 39 PVYRGVRKRA-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 89
                     68*****887.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-133989IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-214098IPR016177DNA-binding domain
SMARTSM003801.1E-3640103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-324098IPR001471AP2/ERF domain
PROSITE profilePS5103223.5784097IPR001471AP2/ERF domain
PRINTSPR003671.6E-104152IPR001471AP2/ERF domain
CDDcd000188.14E-344199No hitNo description
PRINTSPR003671.6E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MASGANHITS ENSDNSPTSS VTTDDQTQTR QKQKDTKHPV YRGVRKRAWG KWVSEIREPR  60
KKSRIWLGTF STPEMAARAH DVAALTIKGT SAVLNFPDLA SSLPRPLSNS PRDVQLAAAK  120
AAALEFDVSP AGGATVEEEK NTPCVSAFSL SSTSSSSSSS STALSPESSA VSSSPMTEND  180
EEQLLGEIVE LPSLEDVTGF DSGEFVDKTW LMYEYYNDSE SDPFLQWWV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1938971272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688291.13e-83PREDICTED: ethylene-responsive transcription factor ERF043
SwissprotQ391272e-50TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A0K9R3G02e-75A0A0K9R3G0_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010688291.11e-82(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.19e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]