PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016963-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 380aa    MW: 41465.4 Da    PI: 7.7554
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016963-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1377163186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  + +Li+a  e+  +l+rg+lk+++W ev++ +     +++ ++ +qCk++++ ++k+yk +k    ++     s++ +f++l+
  AHYPO_016963-RA  77 CWSEGATSVLIDAWGERYVQLSRGNLKQKHWMEVADIVnkeDPTKVPKTDIQCKNRIDTVKKKYKTEKLKIANGY--GPSRWTFFERLD 163
                      7*************************************866677788899******************9999984..4557******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-2475165No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDEDEEIKSQ SDSPDSESHS PGVPQPMPLN QIAAVTVAAA APTSAAADSV AQKSLTLALP  60
IQQSSRLGGG GGGREDCWSE GATSVLIDAW GERYVQLSRG NLKQKHWMEV ADIVNKEDPT  120
KVPKTDIQCK NRIDTVKKKY KTEKLKIANG YGPSRWTFFE RLDRLIGSAA GTLNPSFGKG  180
LGSGFGTPSA AGVTVSPPPA TVSTADPKSI PVGIPIQPAM ESDSDKEDWS NDSRDSLPPD  240
RTRFQSRKRK SMELNRGDDP GGIETGKGKK RVKKSDSKVW GESVRELTKA ILKFGEAYEA  300
AESMKLQHTM EMEMQRMKFA KELELQRMKF MMKIQLELSQ LNGNGNVDSD SRGGGESNHH  360
NYHKHDNHVN NHTNSDTSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0944910.0EU094491.1 Amaranthus hypochondriacus clone AHAAC025 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126280.13e-95trihelix transcription factor ASIL2-like
RefseqXP_027167962.13e-95trihelix transcription factor ASIL2
SwissprotQ9LJG82e-53ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A068TR214e-94A0A068TR21_COFCA; Uncharacterized protein
STRINGXP_009600232.12e-89(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-43sequence-specific DNA binding transcription factors