PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016979-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 128aa    MW: 14665.5 Da    PI: 10.7706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016979-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.2e-152271154
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                     ++y+GVr ++  g W AeIr p e   rkr++lg+f taeeA k ++  ++k+e
  AHYPO_016979-RA 22 CKYRGVRHRP-CGTWGAEIRNPFE---RKRVWLGTFNTAEEASKVYEDKKRKYE 71
                     79*****999.8*********755...5*********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.3E-243127IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008472.8E-72271IPR001471AP2/ERF domain
CDDcd000186.90E-202263No hitNo description
Gene3DG3DSA:3.30.730.102.6E-192378IPR001471AP2/ERF domain
SMARTSM003801.3E-122386IPR001471AP2/ERF domain
PROSITE profilePS5103217.242380IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-142378IPR016177DNA-binding domain
PRINTSPR003673.4E-82435IPR001471AP2/ERF domain
PRINTSPR003673.4E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MDVIESETSN KDTKKQSPNK KCKYRGVRHR PCGTWGAEIR NPFERKRVWL GTFNTAEEAS  60
KVYEDKKRKY EYMKAHQNAS TSVATHAPPR FKSRSKSGPK SRSKSQSKHK LTNPPDSVVE  120
YRLTFTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.17e-18cytokinin response factor 3