PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016997-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ZF-HD
Protein Properties Length: 164aa    MW: 17439.1 Da    PI: 7.0611
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016997-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.41.7e-333593259
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                     ++v+YkeC+kNhAas+Ggha+DGC+Efmp ++++ +++++l+CaACgCHRnFHRr++++
  AHYPO_016997-RA 35 HHVTYKECMKNHAASIGGHALDGCCEFMPGPTTNpSDPTSLTCAACGCHRNFHRRDPDD 93
                     5799*****************************99********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.1E-283791IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-203793IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-293890IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.6633990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAMDFISGPT PHTPDSDTDT PPHAPPSKRA HHQHHHVTYK ECMKNHAASI GGHALDGCCE  60
FMPGPTTNPS DPTSLTCAAC GCHRNFHRRD PDDPVPLHHL IPSGQKAQSP PSASQLLLSL  120
SSPTSGPSDH ENLHTNPTVL GYYNNNGGNG QNGNFNFQKG KNA*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842966.14e-59zinc-finger homeodomain protein 8-like
SwissprotQ9LXG08e-30ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A0K9RTK13e-60A0A0K9RTK1_SPIOL; Uncharacterized protein
STRINGXP_010683186.12e-41(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-30homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]