PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017005-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 253aa MW: 28347.9 Da PI: 6.5153

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017005-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	71	1.8e-22	15	58	1	44
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 kprl+WtpeLH++Fv+av+qLGG+e+AtPk ++++m+++gLtl+ AHYPO_017005-RA 15 KPRLKWTPELHQQFVDAVNQLGGPERATPKGLMRVMGIPGLTLN 58 79****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-19	13	58	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.85E-9	14	57	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-14	15	57	IPR006447	Myb domain, plants
Pfam	PF14379	5.6E-22	60	106	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MISQDMNLVL STDAKPRLKW TPELHQQFVD AVNQLGGPER ATPKGLMRVM GIPGLTLNAR 60 ISQAIEIQME VQRKLHEQIE VQRHLQLRIE AQGKYLQKVL KKAHETISNY NCSETGLEHA 120 KAELSQLVSM VNSSSFSGLT DATDLSCTMR YTGCSNESSL TSSESSGRRD EEFEKGSHEN 180 CMFIRPLLDD SRTQELGSRK RSRNTVYENN WVEQTGSKKS KFGLLETIDL NSQCGNDLDL 240 GSRQPIDLNS KE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-14	14	57	1	44	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-14	14	57	1	44	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-14	15	57	1	43	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-14	15	57	1	43	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-14	15	57	1	43	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-14	15	57	1	43	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-14	14	57	1	44	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-14	14	57	1	44	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-14	14	57	1	44	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-14	14	57	1	44	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-14	14	57	1	44	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-14	14	57	1	44	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021746851.1	1e-96	myb family transcription factor PHL8-like isoform X2
Swissprot	Q9SQQ9	7e-42	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A0K9RVJ2	4e-72	A0A0K9RVJ2_SPIOL; Uncharacterized protein
STRING	XP_010683165.1	2e-72	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	2e-41	myb-related protein 1

Link Out ? help Back to Top
Phytozome	AHYPO_017005-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]