PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017006-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 415aa MW: 45845.8 Da PI: 8.6092

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017006-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.7e-38	111	170	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++c+rC s++tkfCy+nny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+s AHYPO_017006-RA 111 PDKIIPCARCSSMETKFCYFNNYNVNQPRYFCKNCQRYWTAGGSMRNVPVGAGRRKNKNS 170 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	98	168	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-30	113	169	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.503	115	169	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	117	153	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MIQLGSNCVQ HPSVLVSDCD STTSDQNLLC SKQGKNRANQ EASTNENKNT NQQEQQSSAS 60 ELQESKTPNS PSTNSENPKI TTKNLSKKDE DHSDQASSNS ESQDQTTLKK PDKIIPCARC 120 SSMETKFCYF NNYNVNQPRY FCKNCQRYWT AGGSMRNVPV GAGRRKNKNS ATSQHCHFVI 180 PGASDGLVHH MIKHNGTVIA LGMDSSLASR SNVSMLDGSQ HTLTNGFYKS EIERECDITL 240 SSSDSVSIEK QLLCNDSQNP IAWQSGYPIW GEHLARPNWN LNWVPIQSMH SDRSSTNSSP 300 SSSSLGKHSR EGLKLTPSSK EKESKISRIV IPKTLRFDDP SEVAKSSIWT TLRSKNNHID 360 PSNGKVALFG GSQQAKQVNY ERRTINQSIE PSSMVFQANP VSFSMSLAFN EVAR*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MIQLGSNCVQ HPSVLVSDCD STTSDQNLLC SKQGKNRANQ EASTNENKNT NQQEQQSSAS  60
ELQESKTPNS PSTNSENPKI TTKNLSKKDE DHSDQASSNS ESQDQTTLKK PDKIIPCARC  120
SSMETKFCYF NNYNVNQPRY FCKNCQRYWT AGGSMRNVPV GAGRRKNKNS ATSQHCHFVI  180
PGASDGLVHH MIKHNGTVIA LGMDSSLASR SNVSMLDGSQ HTLTNGFYKS EIERECDITL  240
SSSDSVSIEK QLLCNDSQNP IAWQSGYPIW GEHLARPNWN LNWVPIQSMH SDRSSTNSSP  300
SSSSLGKHSR EGLKLTPSSK EKESKISRIV IPKTLRFDDP SEVAKSSIWT TLRSKNNHID  360
PSNGKVALFG GSQQAKQVNY ERRTINQSIE PSSMVFQANP VSFSMSLAFN EVAR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021842986.1	1e-135	cyclic dof factor 1-like isoform X2
Refseq	XP_021842987.1	1e-135	cyclic dof factor 1-like isoform X2
Refseq	XP_021842988.1	1e-135	cyclic dof factor 1-like isoform X2
TrEMBL	A0A0K9QK89	1e-131	A0A0K9QK89_SPIOL; Uncharacterized protein
STRING	XP_010683163.1	1e-120	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-45	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	AHYPO_017006-RA