PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017031-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

WOX

Protein Properties

Length: 283aa MW: 31371 Da PI: 5.0159

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017031-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	100	160	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++++l +++e++V++WFqNrRa+ k+ AHYPO_017031-RA 100 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITAELsqhgQISETNVYNWFQNRRARSKR 160 89***************99************************************97 PP
2	Wus_type_Homeobox	104	9.9e-34	99	162	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq AHYPO_017031-RA 99 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 162 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.754	96	161	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-17	97	165	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-14	98	165	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-18	99	162	IPR009057	Homeodomain-like
CDD	cd00086	1.54E-14	100	162	No hit	No description
Pfam	PF00046	3.2E-19	100	160	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MMEPQQIPQS LQQPHENGNG IGLIDGTNNG GINGVLYVKV MTDEQLEILR TQIAVYATIC 60 EQLVEMHKAI TAQQDLAGVR LGNLYCDPLV SAVGHKITAR QRWTPTPVQL QILERIFDQG 120 TGTPSKQKIK EITAELSQHG QISETNVYNW FQNRRARSKR KQLNNTQNNG ESEVETDAES 180 PKDKKTKPEI FQSQPNSILR ADDSCFQNQE LSSSMHTIDS QPGKIDPVFA SDGSSKSTQS 240 LSQLAFYESI LQNPRIDDLI GKMEVPGSYS GYPPTEDYSM TG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	161	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680605.1	1e-171	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-92	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0K9QH84	1e-161	A0A0K9QH84_SPIOL; Uncharacterized protein
STRING	XP_010680605.1	1e-171	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-89	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	AHYPO_017031-RA

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]