PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017050-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 297aa    MW: 32846.2 Da    PI: 9.1149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017050-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13234279655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l+P+     +k  + a++L +AveYIk+Lq
  AHYPO_017050-RA 234 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVEYIKDLQ 279
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193228278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16230288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-13232283No hitNo description
Gene3DG3DSA:4.10.280.107.1E-16233289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-14234284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-10234279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDSDFQQQQY QHHFQDLPGQ FSHQKQQSNG LTRFRSAPSS YFSSFLDAAA DTISSFNGDG  60
GGGSGGGGGE RRDFGNARPL SPETENIFSR FMSSIGAEND NPLQKQAASS IPQMKTGMGG  120
GVHTLTRHSS SPAGFFSNLN IEGYGTLGGS GNYVGNDQMN FSSGLPSSTT EIMNSNSDVG  180
TKRLRMNKLD ETRFNNPRNN DRNYDFTMKS FLQFQDTVPC KIRAKRGFAT HPRSIAERVR  240
RTRISERMRK LQDLVPNMDK QTNTADMLDL AVEYIKDLQK QVETLTDNQA KCTCSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0944971e-107EU094497.1 Amaranthus hypochondriacus clone AHAAC037 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916486.15e-67transcription factor bHLH130-like isoform X2
TrEMBLA0A1U8JG828e-63A0A1U8JG82_GOSHI; transcription factor bHLH122-like isoform X1
STRINGGorai.009G071900.12e-62(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.15e-50bHLH family protein