PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017174-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 348aa    MW: 37956 Da    PI: 9.7896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017174-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88e-32276333359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeHnh+
  AHYPO_017174-RA 276 DDYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERALDDPNMLIVTYEGEHNHS 333
                      99***********************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-17232272IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-33262333IPR003657WRKY domain
PROSITE profilePS5081131.514269335IPR003657WRKY domain
SuperFamilySSF1182902.62E-27272333IPR003657WRKY domain
SMARTSM007742.0E-38274334IPR003657WRKY domain
PfamPF031062.7E-27276332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAVDLMHNSS SSSSSNNNNL SLSLSSSHME EAIVHETSAG LQSVHNFLQL LSLKQEHPST  60
TSSPAGNFSD NYKNKMEIDL NCQAVADDAV LRFKKVISLL GRDRTGHARF RRGPAVEQVK  120
QQSNGVVLCP KPLQQVPMMK MNGYDFKSGT PTGTINFSYS SPVISAGNSV KSTLTGDVEM  180
KHESLGDRIN LLDSSLLTAS TTTSFQMTNY SGAVSSVGRP PLSHTTSFKL RKCYSENGKC  240
GGPSGRCHCS KKRKMRLKRI VRVPAISSKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC  300
STVRGCPARK HVERALDDPN MLIVTYEGEH NHSLSVAEAS SLILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-212723341576Probable WRKY transcription factor 4
2lex_A1e-212723341576Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839232.11e-174probable WRKY transcription factor 15
TrEMBLA0A0K9QLS31e-172A0A0K9QLS3_SPIOL; Uncharacterized protein
STRINGXP_010679527.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-81WRKY DNA-binding protein 7