PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017188-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 159aa    MW: 18022 Da    PI: 7.6258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017188-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-054668123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  AHYPO_017188-RA 46 YTCTFCRREFRSAQALGGHMNVH 68
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-64373No hitNo description
Gene3DG3DSA:3.30.160.606.1E-44471IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1574673IPR007087Zinc finger, C2H2
SMARTSM003550.00664668IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-54669IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MLMPNMKNMS FNEEGIVGEE SWELARAFAE DTRNNPRGTN WPPRSYTCTF CRREFRSAQA  60
LGGHMNVHRR DRARLHHQQT NIQAQAQAQV QARYMNVGPT TSSIYYDQFN SIGSHFLPTS  120
RYYSEMQVNE MSNGAEPGWG AIGGGEVIEL ADMARWGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-144168229superman protein
2l1o_A9e-144168229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677249.11e-38PREDICTED: transcriptional regulator SUPERMAN
STRINGXP_010677249.14e-38(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-27C2H2 family protein