PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017209-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 209aa    MW: 23409.1 Da    PI: 4.8161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017209-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1896146255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+++AeIrd + ng   r++lg+f+t+e Aa a+++a+ + +g
  AHYPO_017209-RA  96 SYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTPEAAALAYDQAAFSTRG 146
                      69*******.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.17E-1995156No hitNo description
Gene3DG3DSA:3.30.730.101.1E-2996154IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2296156IPR016177DNA-binding domain
SMARTSM003801.6E-3696160IPR001471AP2/ERF domain
PfamPF008471.4E-1296146IPR001471AP2/ERF domain
PROSITE profilePS5103222.74896154IPR001471AP2/ERF domain
PRINTSPR003672.0E-1097108IPR001471AP2/ERF domain
PRINTSPR003672.0E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKSSCSESSS FKSSSSESFC WEEFNQPNIL PFNEFDSQDM FLLDMLSSIN QTTTTTMTMT  60
TTTTHPTSSS SSRVRVKEEE VTSTINEENL NTSEKSYRGV RKRPWGKYAA EIRDSTRNGV  120
RVWLGTFDTP EAAALAYDQA AFSTRGSMAV LNFPVDVVKE SLKEMNYEFG NGCSPVLVMK  180
DRLSLRKSKD LGSDYLEQLL MASETIHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2995157163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725892.18e-80ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-57ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A0K9Q8L32e-75A0A0K9Q8L3_SPIOL; Uncharacterized protein
STRINGXP_010671217.15e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-50ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]