PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017235-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB
Protein Properties Length: 277aa    MW: 31370.2 Da    PI: 7.8672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017235-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-082771345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+eE +++ +a + +  +   +W++Ia +++ g++  +++  + 
  AHYPO_017235-RA 27 TWTKEENKQFEKALAIFDDNtpdRWSRIAGMIP-GKSVRDVIKQYE 71
                     6*****************99*************.****99998876 PP
2Myb_DNA-binding40.27.8e-13129173347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+++++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
  AHYPO_017235-RA 129 PWTEDEHKRFLLGLQKYGKGDWRNISRNFVISKTPTQVASHAQKY 173
                      8*****************************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-42174IPR009057Homeodomain-like
PROSITE profilePS512938.2962378IPR017884SANT domain
SMARTSM007172.5E-102476IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-122681IPR009057Homeodomain-like
PfamPF002491.3E-62773IPR001005SANT/Myb domain
CDDcd001672.72E-82774No hitNo description
PROSITE profilePS5129417.503122178IPR017930Myb domain
SuperFamilySSF466891.57E-16124179IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-19125177IPR006447Myb domain, plants
SMARTSM007171.0E-10126176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-10126172IPR009057Homeodomain-like
PfamPF002494.4E-11129173IPR001005SANT/Myb domain
CDDcd001676.40E-9129174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGAIYPTSLF SNSNYNWLFH GDCKNTTWTK EENKQFEKAL AIFDDNTPDR WSRIAGMIPG  60
KSVRDVIKQY EELLEDVTDI EAGLVPIPGY LASSPFTLEW VDNKRFDPFR KKSGSLIRPH  120
EHERKKGVPW TEDEHKRFLL GLQKYGKGDW RNISRNFVIS KTPTQVASHA QKYFLRQNSE  180
GKDKRRPSIH DITTANLSDN TIPPITESDD QKPKSLLEHS AASFPLLQKS INIVPNLLFD  240
WSNSGGDAFM VFDSTHGLQN LYSTAHQGAS AYVGSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-16281061187RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690085.11e-174PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H72e-94DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0K9RI921e-152A0A0K9RI92_SPIOL; Uncharacterized protein
STRINGXP_010690085.11e-173(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-87MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]