PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017259-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 413aa    MW: 45700.6 Da    PI: 7.5696
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017259-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.8e-114469126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C +++rtG C yG++C+F+H+
  AHYPO_017259-RA 44 PGEPDCLYYLRTGLCGYGANCRFNHP 69
                     5789*********************8 PP
2zf-CCCH308.8e-1088112226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C ++++tGtCky  +Ck++H+
  AHYPO_017259-RA  88 GQPDCGYYLKTGTCKYSRSCKYHHP 112
                      6799********************9 PP
3zf-CCCH28.62.5e-09133158227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C +++rt  Ck+G +CkF H++
  AHYPO_017259-RA 133 DEKPCAHYMRTYVCKFGLSCKFDHPQ 158
                      5789********************97 PP
4zf-CCCH38.22.3e-12281305327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++Cr+f+ +G Ck+G++CkF H++
  AHYPO_017259-RA 281 QPECRYFMTNGSCKFGSTCKFDHPK 305
                      799********************96 PP
5zf-CCCH33.85.7e-11322347227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      + elC +++ +G+CkyG++CkF H++
  AHYPO_017259-RA 322 GDELCIDYSSYGICKYGPTCKFDHPM 347
                      569*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2444371IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-54370IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-84569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-54869IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-44968IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-586113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.26386114IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-788112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-591115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.634131159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5131160IPR000571Zinc finger, CCCH-type
SMARTSM003560.26133158IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-7133158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001135157IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.305278306IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9281305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6282306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5284304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662320348IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5320347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5320346IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-9322347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5324345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSDNPKIQSN AETVLRNESI DKIEEGISEK EIGSGESREY PDRPGEPDCL YYLRTGLCGY  60
GANCRFNHPN ILPSKSDENT SELPQREGQP DCGYYLKTGT CKYSRSCKYH HPLDRRGAAQ  120
VSLNTLGLPI RQDEKPCAHY MRTYVCKFGL SCKFDHPQPA LPKTSIPVPG NLPVRTMGST  180
MPSTGIPYVG TLPAWSLPSS YVANSHVSGP HTYLPVVFPS LQTPLTAQCW NGYMFVVSFG  240
EQENSSSISA SQNFVYNPQS QAKHDTGAPQ AISELPDRPN QPECRYFMTN GSCKFGSTCK  300
FDHPKQRIAY NLGPHGLPFR PGDELCIDYS SYGICKYGPT CKFDHPMYYY GMPSIPMVDL  360
SMFTGVTNMV IPQPTHVSQV KSSKITDLIQ KADTFPNKKC LSASSKTVDQ SE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688919.11e-174PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
RefseqXP_010688920.11e-174PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLA0A2I4GA721e-130A0A2I4GA72_JUGRE; zinc finger CCCH domain-containing protein 3-like isoform X1
STRINGXP_010688919.11e-173(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-85C3H family protein