PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017325-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 255aa    MW: 29442.2 Da    PI: 9.8278
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017325-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-1924113198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+ +p +++k  +lv+p  f+++++gk   + +++l++++g+ W+++l  +   ++ +++kGW +Fv +n L+ g+f++F+++g++ f   v
  AHYPO_017325-RA  24 FFKIYLPDYNSK--QLVIPPAFINNFNGK--IPSKVVLKSLQGKDWNIEL--EHDERKLLMKKGWDRFVIDNSLELGEFLIFSYSGNTVF--IV 109
                      778885555554..59*******888777..5668***************..999999***************************99999..99 PP

                      EEE- CS
               B3  95 kvfr 98 
                      k+f+
  AHYPO_017325-RA 110 KIFS 113
                      9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-2419117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-2319117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.76222115IPR003340B3 DNA binding domain
CDDcd100175.58E-1822113No hitNo description
SMARTSM010199.6E-1924115IPR003340B3 DNA binding domain
PfamPF023621.8E-1724113IPR003340B3 DNA binding domain
PROSITE profilePS508637.119152252IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-6162236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-7162235IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVRVMKRRRE TPSKECTTRH PPEFFKIYLP DYNSKQLVIP PAFINNFNGK IPSKVVLKSL  60
QGKDWNIELE HDERKLLMKK GWDRFVIDNS LELGEFLIFS YSGNTVFIVK IFSINGCLKE  120
EKTNTVLHEP IEVSDDSSEA MPEVVQERTV QSKNIRLSKF VDARGYMHIP AAIFRENNIK  180
LPRPKKDILL RYTKGVSQVA QIVQTTRKRV RVSSGWKDFH SKCKIVEGDK CEFDVVVGDD  240
RQIKEIVLLQ ICSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838094.12e-79putative B3 domain-containing protein Os03g0621600
RefseqXP_021847162.12e-79putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0K9S0M56e-77A0A0K9S0M5_SPIOL; Uncharacterized protein
STRINGXP_010674817.13e-44(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-22B3 family protein