PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017335-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YB
Protein Properties Length: 153aa    MW: 17417.7 Da    PI: 5.3907
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017335-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB158.97.9e-50398297
            NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                      e dr++Pianv+rimk++lP  akisk aket+qecv+efisfvt+easdkc++e+rkt+ngdd++wal+tlGf++y e+++ yl kyre+e+ek
  AHYPO_017335-RA  3 DESDRLVPIANVGRIMKQILPPTAKISKGAKETMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALTTLGFDNYGEAITRYLYKYREFEREK 98
                     589******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.8E-473120IPR009072Histone-fold
SuperFamilySSF471131.02E-366134IPR009072Histone-fold
PfamPF008081.2E-25972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.4E-173654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.4E-175573No hitNo description
PRINTSPR006152.4E-177492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MADESDRLVP IANVGRIMKQ ILPPTAKISK GAKETMQECV TEFISFVTGE ASDKCHKENR  60
KTVNGDDICW ALTTLGFDNY GEAITRYLYK YREFEREKAA NCQGRSEEVL AQERDEQDQF  120
LETSSTFPSL EFRIIDPKSK TPFKNPSYVC KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-40493392Transcription factor HapC (Eurofung)
4g92_B5e-40493392Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021742526.17e-74nuclear transcription factor Y subunit B-4-like
SwissprotO040277e-52NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2C9VD158e-64A0A2C9VD15_MANES; Uncharacterized protein
STRINGXP_010674711.11e-69(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-54nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]