PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017491-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 169aa    MW: 19615.8 Da    PI: 4.2855
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017491-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM934.8e-29111291123
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      lppGfrF P+de+lvv++L++k ++++  l+++   i+++d+y ++Pw+L+ k+ +e ++wy++s++         +nr+t+sgyW+  g d++
  AHYPO_017491-RA  11 LPPGFRFYPSDEDLVVHFLRRKDHDHTtiLPFHPRlIPDLDLYPYNPWELQGKALEEGDKWYYYSRKI--------QNRVTESGYWNPMGMDEP 96 
                      79********************99988774443334**************9776677899****9975........58**************** PP

              NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvm 123
                      ++s+ +++ vg+kk  vf+ g+ p+g   +Wv+
  AHYPO_017491-RA  97 IISSsSKKIVGMKKYYVFHIGEPPSGDCNKWVI 129
                      **9866777**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-369133IPR003441NAC domain
PROSITE profilePS5100535.11611157IPR003441NAC domain
PfamPF023652.1E-1612129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MADNNEGDNS LPPGFRFYPS DEDLVVHFLR RKDHDHTTIL PFHPRLIPDL DLYPYNPWEL  60
QGKALEEGDK WYYYSRKIQN RVTESGYWNP MGMDEPIISS SSKKIVGMKK YYVFHIGEPP  120
SGDCNKWVIC KVYEQRNDDD DGDNDTELSC LDEVFLSMDD LDEISLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-261012919140NAC domain-containing protein 19
3swm_B3e-261012919140NAC domain-containing protein 19
3swm_C3e-261012919140NAC domain-containing protein 19
3swm_D3e-261012919140NAC domain-containing protein 19
3swp_A3e-261012919140NAC domain-containing protein 19
3swp_B3e-261012919140NAC domain-containing protein 19
3swp_C3e-261012919140NAC domain-containing protein 19
3swp_D3e-261012919140NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0103601e-37KR010360.1 Suaeda liaotungensis NAC transcription factor (NAC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021751277.12e-79NAC domain-containing protein 104-like
SwissprotQ8GWK67e-63NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1B2RWF36e-78A0A1B2RWF3_9CARY; NAC transcription factor 42
STRINGGLYMA08G08010.18e-75(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-63xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]