PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017499-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Protein Properties

Length: 235aa MW: 26898.5 Da PI: 9.247

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017499-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.4	7.4e-20	130	219	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v+ +l++p++f+++h ++++ +ltl de+g +W+ k+ rk++ l++GW++F +++L +gD ++F+l+++ +l+v AHYPO_017499-RA 130 FIKPMLQSHVTGGFWLSFPNSFCKAHL--PTTDEELTLIDEDGDQWKAKYLARKNG----LSGGWRGFSLDHELVDGDALIFQLIKE--DTLKV 215 89********************995..345669***********667776....*********************9984..44688 PP EEE- CS B3 95 kvfr 98 ++r AHYPO_017499-RA 216 YIIR 219 8887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.7E-25	123	221	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-22	124	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.19E-27	128	219	No hit	No description
PROSITE profile	PS50863	13.69	130	221	IPR003340	B3 DNA binding domain
SMART	SM01019	9.9E-24	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-17	130	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MVTSTISYEE QRKQRLEENK KRMEQLNLHK LSQALKPTPK TNVNPSPVKK LKSRAVDFAV 60 STPPRRSSRT ADKPPPNYKE FGLEPLLAGR RFYKRRDLLN RVYAKDEDRV NAIERAEKLE 120 SHLGSEFPTF IKPMLQSHVT GGFWLSFPNS FCKAHLPTTD EELTLIDEDG DQWKAKYLAR 180 KNGLSGGWRG FSLDHELVDG DALIFQLIKE DTLKVYIIRV NSSDEEGEHK GEEN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021738464.1	1e-126	B3 domain-containing protein At3g19184-like
Refseq	XP_021738465.1	1e-126	B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	2e-81	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A0K9RS36	1e-108	A0A0K9RS36_SPIOL; Uncharacterized protein
STRING	XP_010691035.1	1e-118	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-84	B3 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_017499-RA

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]