PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017537-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

BBR-BPC

Protein Properties

Length: 281aa MW: 31802.1 Da PI: 9.5447

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017537-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	264.9	4.4e-81	27	280	24	301
GAGA_bind 24 lglqlmssia.erdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlse 116 ql++ i erda+i+ rn a ek+ a+aer+ma qr+ a++er++a++er++++ al + +p + + +++ ++ AHYPO_017537-RA 27 CRHQLFTNILaERDAAIEGRNRAWLEKERALAEREMAVSQRNLAIKERDDAVMERNKAVHALHDS-----MLQPLSAGLQLEVNRLQ------- 108 55677765544******************************************9998887662.....23455555555554444....... PP GAGA_bind 117 pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPv 210 +d++++ re ++l+al + a+e +e + k ++k +k k+k+ek+ ++es++ +++++++ ++l+ln v+++ s +P+ AHYPO_017537-RA 109 ---ADHPYGSRELQILNALRRISVASECDEFPPYK------TTKDSKGCTWKRKREKP----TSESDHLKVNNNWDGQNLGLNRVDYNASIMPP 189 ...58899999999888877555555555555444......33333333333322222....33333467889***************** PP GAGA_bind 211 PvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 PvCsCtG++rqCYkWG+GGWqS+CCt t+SvyPLPv++++r aR++grKm ++af+klL++La+eG+d+s pvDLkdhW kHGtn+++ti+ AHYPO_017537-RA 190 PVCSCTGIPRQCYKWGSGGWQSSCCTKTMSVYPLPVVANKRYARVGGRKMTGSAFSKLLSRLASEGFDYSMPVDLKDHWSKHGTNRYITIK 280 ****************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.1E-94	1	280	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	6.9E-78	29	280	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDVGGQRGGA RSKFDDFREV PLWNIECRHQ LFTNILAERD AAIEGRNRAW LEKERALAER 60 EMAVSQRNLA IKERDDAVME RNKAVHALHD SMLQPLSAGL QLEVNRLQAD HPYGSRELQI 120 LNALRRISVA SECDEFPPYK TTKDSKGCTW KRKREKPTSE SDHLKVNNNW DGQNLGLNRV 180 DYNASIMPPP VCSCTGIPRQ CYKWGSGGWQ SSCCTKTMSV YPLPVVANKR YARVGGRKMT 240 GSAFSKLLSR LASEGFDYSM PVDLKDHWSK HGTNRYITIK *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667727.1	1e-124	PREDICTED: protein BASIC PENTACYSTEINE4
Refseq	XP_019103212.1	1e-124	PREDICTED: protein BASIC PENTACYSTEINE4
Swissprot	Q5VSA8	2e-72	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A0J8B270	1e-123	A0A0J8B270_BETVU; Uncharacterized protein
STRING	XP_010667727.1	1e-124	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	3e-75	basic pentacysteine 4

Link Out ? help Back to Top
Phytozome	AHYPO_017537-RA

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]