PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017540-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 564aa    MW: 61502.6 Da    PI: 6.7126
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017540-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-10405463563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l++++
  AHYPO_017540-RA 405 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQNEATTLSAQLTLLQRDSTGLTNQN 463
                      9**********************************************999988888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-18401465IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.921403466IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.15E-11405461No hitNo description
Gene3DG3DSA:1.20.5.1704.7E-9405462No hitNo description
PfamPF001705.4E-9405463IPR004827Basic-leucine zipper domain
CDDcd147032.17E-25406457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MGDTERGNID MMHRLQNPFG ALSRTNNHLD VSQLSISQIR PPLPQNTQNP QNFGTENGKR  60
SGIPPSHPAM PPLSPYSQIP VTRPGVHHSG SQNYTRGPTH SRSLSQQSFF MNDSLPPLSP  120
SPYQNSTSPT NAHEHTNSSN GSLENRDGNG NSLLPPSSFG RSSSLHISEG LPPRKLHRRS  180
ISDIPFGFDN VFQSSPPPTS MIPPSPRGHN GLERSLSGGE FPGSTKPAQL VKKESSWDTN  240
RDGNFEGEVV DDFLSAYMNL DSLDAMNSSG TDERNCNENK DDMDSRASGS KTNGCESSDT  300
EAESSVNESG TGRKRGAAGE AAPTTRHYRS ISMDSFMGSM NFGDESPKLP PSPSTGVAQL  360
SLKDPANGDS NAFNLEFGNG EFTGAELKKI MANEKLAEIA LTDPKRAKRI LANRQSAARS  420
KERKMRYISE LEHKVQTLQN EATTLSAQLT LLQRDSTGLT NQNNELKFRL QSMEQQAQLR  480
DALNEALTAE IQRLKMATGE INAESMSKCF GQQLFVNPQM YQQQQQPQSG PTNPSKLQQP  540
IAQQEQPTAQ DSNSTSTKSE SKQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665860.10.0PREDICTED: uncharacterized protein LOC104883107
TrEMBLA0A0J8B6710.0A0A0J8B671_BETVU; Uncharacterized protein
STRINGXP_010665860.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-141bZIP family protein