PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017541-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C3H

Protein Properties

Length: 713aa MW: 79746.8 Da PI: 6.0257

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017541-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.8e-06	139	151	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 C+yGd+C+F+H+ AHYPO_017541-RA 139 SCSYGDKCRFSHD 151 6***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.652	122	153	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.0E-4	127	153	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7	166	191	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	5.3E-74	356	599	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	5.13E-64	360	673	No hit	No description
CDD	cd02801	1.37E-92	360	595	No hit	No description
Pfam	PF01207	1.1E-49	363	631	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	444	462	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MNESEIEPSH TENIPTEILN PSELPNSAME ESKSELLETE NAAPKPLPEN SDRGQLSAEE 60 LVAKAIAPVK KEFLRPPPSS RSAISDTNKD ENGKSESTKK SGIVKEKKSK RQLKRERREE 120 RNSSLNICPS IAKTEDVSSC SYGDKCRFSH DLEAYKSERP ADLEGECPFT SAQKSCPYGL 180 TCRFYGTHKD LPNENLDTLK ESSEVNVLKK DVQKLLWKNK MKFPKSNVAL KQLGLVGKGH 240 TRVKESEEEF DIPKIDNNSL CSEDNGCEKY DSGDKQDASV DEEPPVDGIL ASDDNRPAKK 300 AKSDDDAQRK PSNDIINGAS LTSDSSKDIS QNKNEYRPQD SDASLKLHPR ERKLIDFRGK 360 LYLAPLTTVG NLPFRRVCKV LGADVTCGEM AMCTNLLQGQ ASEWALLRRH KSEDLFGVQI 420 CGAYPDTVAR AVELIDQECS VDFIDINMGC PIDIVVNKGA GSALLTKPLR MKNVIQAACA 480 SAEKPITVKV RTGYIEGRNR VDSFISDIYE WGASALTIHG RSRQQRYSKL ADWEYINTCV 540 KKAPSSFQVL GNGDVFSYVD WNKHFSDCPE LSSCMIARGA LLKPWLFTEI KEQRHWDISS 600 GERLEILKDY VRFGLEHWGS DSKGVETTRH FLLEWLSYTC RYVPVGLLEV IPQRLNWRPP 660 SYYGRDDLET LMASESAADW IRISEMLLGK VPSGFTFAPK HKSNAYDSAE NG*

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MNESEIEPSH TENIPTEILN PSELPNSAME ESKSELLETE NAAPKPLPEN SDRGQLSAEE  60
LVAKAIAPVK KEFLRPPPSS RSAISDTNKD ENGKSESTKK SGIVKEKKSK RQLKRERREE  120
RNSSLNICPS IAKTEDVSSC SYGDKCRFSH DLEAYKSERP ADLEGECPFT SAQKSCPYGL  180
TCRFYGTHKD LPNENLDTLK ESSEVNVLKK DVQKLLWKNK MKFPKSNVAL KQLGLVGKGH  240
TRVKESEEEF DIPKIDNNSL CSEDNGCEKY DSGDKQDASV DEEPPVDGIL ASDDNRPAKK  300
AKSDDDAQRK PSNDIINGAS LTSDSSKDIS QNKNEYRPQD SDASLKLHPR ERKLIDFRGK  360
LYLAPLTTVG NLPFRRVCKV LGADVTCGEM AMCTNLLQGQ ASEWALLRRH KSEDLFGVQI  420
CGAYPDTVAR AVELIDQECS VDFIDINMGC PIDIVVNKGA GSALLTKPLR MKNVIQAACA  480
SAEKPITVKV RTGYIEGRNR VDSFISDIYE WGASALTIHG RSRQQRYSKL ADWEYINTCV  540
KKAPSSFQVL GNGDVFSYVD WNKHFSDCPE LSSCMIARGA LLKPWLFTEI KEQRHWDISS  600
GERLEILKDY VRFGLEHWGS DSKGVETTRH FLLEWLSYTC RYVPVGLLEV IPQRLNWRPP  660
SYYGRDDLET LMASESAADW IRISEMLLGK VPSGFTFAPK HKSNAYDSAE NG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	5e-27	357	604	27	266	tRNA-dihydrouridine synthase B
6ei9_B	5e-27	357	604	27	266	tRNA-dihydrouridine synthase B
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Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021753466.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A0J8B5L1	0.0	A0A0J8B5L1_BETVU; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	XP_010665864.1	0.0	(Beta vulgaris)

Link Out ? help Back to Top
Phytozome	AHYPO_017541-RA

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]