PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017558-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 232aa    MW: 25843.8 Da    PI: 8.1969
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017558-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.13.6e-2392143959
                      EEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   9 KYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      KYGqK+ ++++ pr+YY+C+ a  C+vkkkv+rsa+d++++e tYegeHnh+
  AHYPO_017558-RA  92 KYGQKTTRDNPSPRAYYKCANApICQVKKKVQRSANDKSILEATYEGEHNHP 143
                      9*******************999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.24192145IPR003657WRKY domain
PfamPF031061.3E-1892143IPR003657WRKY domain
SMARTSM007741.4E-2092144IPR003657WRKY domain
SuperFamilySSF1182903.14E-1892145IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-2192146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MNRENKKLTQ LLASMCGNYS ELQNQLIGLI SPSSSKTEND ENSSPKKRNF FETLDNNNGI  60
QQGNTEQSCI TYDDDSCKRL RFLSSKPKIT NKYGQKTTRD NPSPRAYYKC ANAPICQVKK  120
KVQRSANDKS ILEATYEGEH NHPQPNAKDH LDNNHVILSN NCNNNKICSP TSIPTISLDD  180
DDKVDEVKAL QRVFVEEMAS SLTKDPSFTS ALAAAISGKL SSPQCNYINR F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739597.15e-96probable WRKY transcription factor 40
TrEMBLA0A0J8CWM52e-92A0A0J8CWM5_BETVU; Uncharacterized protein
STRINGXP_010667511.13e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-50WRKY DNA-binding protein 40