PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017638-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 317aa MW: 34722.3 Da PI: 8.5053

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017638-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.7e-38	78	136	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+ lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+ k+ AHYPO_017638-RA 78 EAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGSRRTTKR 136 6779**************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-34	61	135	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-32	80	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	81	135	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MVFSSLPLYH LDTHNWHQQS NEEHLIIPTH HDSSGQYPLP GAPHNHGGGG GGGNGPTSSV 60 KPNSMVDRAR QAQIPLPEAG LKCPRCESTN TKFCYFNNYS LTQPRHFCKT CRRYWTRGGA 120 LRNVPVGGGS RRTTKRTKGK NNNSINNNNI SNNNNNNDNN ANANNNASIN LFLTPNNLPQ 180 LPFLPSSLLS NPNPNGIGLN LLGHGGVEME FPLMGNNPNF NGMQMINPFD HNSSHGSYEI 240 LGGRLIPKSL DPHHEMIDRV ASVKLEDSHQ GLSLSKEFVL DHHNHYNNWN TSSTNVWANS 300 DLSGFTSPSS NSHLLG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021739844.1	1e-101	dof zinc finger protein DOF3.6-like
TrEMBL	A0A0K9RNF7	2e-91	A0A0K9RNF7_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	8e-51	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	AHYPO_017638-RA