PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017714-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 332aa    MW: 36449.6 Da    PI: 8.334
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017714-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP71.91.2e-22101164278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C v+gC++dl+++++yhrrh+vCe hsk+pvvlv+g+eqrfCqqCs             sCr+rL++hn+rrrk+q+
  AHYPO_017714-RA 101 CAVDGCTSDLNRCRDYHRRHRVCERHSKTPVVLVAGKEQRFCQQCS-------------SCRKRLDGHNRRRRKRQP 164
                      *********************************************9.............9**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575133No hitNo description
Gene3DG3DSA:4.10.1100.101.9E-2194147IPR004333Transcription factor, SBP-box
PROSITE profilePS5114122.28198162IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-2899168IPR004333Transcription factor, SBP-box
PfamPF031106.4E-15101161IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEWDSRTCAW NGISKLEVED NSYNHHLAAT LACSSGSGLT NMFSVDLNLG RLEDMPDLSM  60
ETFNNSVPTN MGPTPPPTSP VMALSKRGRP RNNGAQTTVF CAVDGCTSDL NRCRDYHRRH  120
RVCERHSKTP VVLVAGKEQR FCQQCSSCRK RLDGHNRRRR KRQPEAFYMP DSAGGFLSSH  180
TGDGMMQFCC PQVHNTTNWP TISQPDLYYR NNQETIYHPH VNEIAPTQSR RGCLKTSPEN  240
ESGCALSLLS MCPSQSSAIS VGPIMSPSPP PQARNSTSLN LNSLVQLSFS QGSAALSSTN  300
NTNSPGFGGF HSSQDGFRAN GSSKFFPFGW D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-1692161284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021713647.11e-157squamosa promoter-binding-like protein 16 isoform X1
TrEMBLA0A0K9QA891e-135A0A0K9QA89_SPIOL; Uncharacterized protein
STRINGXP_010679997.11e-146(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-29SBP family protein