PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017737-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 418aa    MW: 45914.4 Da    PI: 4.7871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017737-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-053093461254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  AHYPO_017737-RA 309 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 346
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.22297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-12307362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.24E-6307350No hitNo description
Gene3DG3DSA:4.10.280.108.5E-9311354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEEFQGGVCG GTWWNPPHNL FSGGLSSPCS VAQLGGGGFD MGNFGWQNDV IKGKINNNNT  60
IFDNLFFSDQ MDSSLDILGF SSTTDWNNHQ NLMCNNEAKF GSIIQENMNN NHEDASASMG  120
MTASSNSSSG DSSTITCEGV LPNTFQMINS SASYLIQSLF DDSDDQSQSI SHHDHQPQFI  180
NNPNPITSNF GSLDSCNEII SSTNSWVNSL PDHHQYPNIQ SLQNDKVIDE GFNSLINGHG  240
QYSPTTLDNI RGSLLNSLQS RSRASFGTKV NSEEHCRESK NNSSNNKDQS PPKKPRIQTP  300
SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHEAI EYIKFLHDQV NVLSTPYLKS  360
GTAIQQQGCE KLKDNEGDDQ ELRSKGLCLV PISSTYPMTQ ETPIDFWTPT FGGTTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726287.11e-179transcription factor bHLH112-like
TrEMBLA0A0J8B6H71e-160A0A0J8B6H7_BETVU; Uncharacterized protein
STRINGXP_010665766.11e-161(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-51bHLH family protein