PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017799-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family FAR1
Protein Properties Length: 233aa    MW: 26858.8 Da    PI: 8.7189
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017799-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.51.3e-105852590
             FAR1 25 ngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                     +  ++++ + Cs  g r++ekk                + +++r+ a trtgC+a+++ kk++ g +ev++ +  HnH+++
  AHYPO_017799-RA  5 TSDVIEKYYLCSAAGIRNTEKKFvkgtqshdtectektKIRKERRVAITRTGCNACIRAKKNTFGLFEVIDHVVAHNHQMT 85
                     5679999************99999**********99766666678899******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-7585IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKQGTSDVIE KYYLCSAAGI RNTEKKFVKG TQSHDTECTE KTKIRKERRV AITRTGCNAC  60
IRAKKNTFGL FEVIDHVVAH NHQMTRTQWN YRHRSERQMS DHKKEAIETM QLAGLQPMES  120
YRLLSAEAGG EHTIGHTVKD HLNFCHKLKM KKIDGGDANS VIEQLDQKLS DNPDFFYRVR  180
LDEEGKICCI FWRDAMMLED YKIFGDVVVM DTSYKKNKYN LICALFVGIN NH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021742789.19e-92protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_021865097.11e-91protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_010665579.11e-85(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-34FAR1-related sequence 5