PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017803-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 197aa    MW: 22832.6 Da    PI: 9.2367
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017803-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-071449148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l  +v+++G            + R++k+c++rw++yl
  AHYPO_017803-RA 14 KGAWSVEEDDKLRAYVQRYG------------LARCGKSCRLRWLNYL 49
                     79******************............36999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.94953IPR017930Myb domain
SMARTSM007176.0E-61351IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-171493IPR009057Homeodomain-like
PfamPF002491.3E-61449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-121556IPR009057Homeodomain-like
CDDcd001673.61E-51649No hitNo description
SMARTSM007170.00175494IPR001005SANT/Myb domain
CDDcd001674.92E-55792No hitNo description
Gene3DG3DSA:1.10.10.604.4E-135796IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVRTPYIDEN GLKKGAWSVE EDDKLRAYVQ RYGLARCGKS CRLRWLNYLR PNVKLGSYTK  60
DEEDLIIKLH LQFANLPGRT DNEIKNYWHT HLKKRVTQQP STLTCKPRKR IGKKVQIKDK  120
YDLKDNINVL ILESYPYPLS PLQPQQSNHN NNSENSSSIP SSSSSSSLAS SSSHHDQENY  180
NDELLDGSFW NQPFFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-17129625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087685.16e-54myb-related protein Myb4
TrEMBLA0A067JXL71e-52A0A067JXL7_JATCU; MYB family protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-37myb domain protein 9