PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017835-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 355aa    MW: 39382.1 Da    PI: 6.2421
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017835-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.3e-11220265550
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++ 
  AHYPO_017835-RA 220 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA 265
                      8999*********************************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-12216280IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.703218270IPR004827Basic-leucine zipper domain
PfamPF001708.4E-10220264IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-13220271No hitNo description
SuperFamilySSF579598.44E-12220274No hitNo description
CDDcd147031.76E-24221271No hitNo description
PROSITE patternPS000360223238IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAQLPPKIPN IPQQNWPLAF PPHQKMPPLT NNPSQQQQSN NSSWVDEFLD FTSTRRGTHR  60
RSVSDSIAFL EGPHLVVDEI RNASNGGGGG GGGGFDRLDD EQLMSMFSDE ISAGLPGMVG  120
PPSSPSDQNS NNEEKAMSTD NTNCNGNNDG ELQQQQLLQC FPKSEPGEVE SACQNGPHNN  180
NSNNNNNNNN NNNNNNNNNQ ISPVSDNNHQ SGADNFIDPK RVKRILANRQ SAQRSRVRKL  240
QYISELERSV TTLQTEVSAL SPRVAFLDHQ RLILNVDNSA LKQRIAALAQ DKIFKDAHQE  300
ALKKEIERLR QIYQQQQQSV KKMNNTDNNN NNGHAIQSAT DHNMNCTEKE QIMA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021773771.11e-155basic leucine zipper 61-like isoform X2
SwissprotQ9M2K41e-97BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A0K9RAZ51e-126A0A0K9RAZ5_SPIOL; Uncharacterized protein
STRINGXP_010675419.11e-133(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-85bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]