PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017838-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HB-other
Protein Properties Length: 182aa    MW: 20747.9 Da    PI: 10.3007
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017838-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.29.1e-0632493956
                     S-HHHHHHHHHHHHHHHH CS
         Homeobox 39 LterqVkvWFqNrRakek 56
                     +  +qV +WFqNrR+  +
  AHYPO_017838-RA 32 IHMKQVWNWFQNRRYALR 49
                     7889**********9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-62349IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-43254IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRFFLLIPVL VYLIVSSFEC SNSPERSGKS TIHMKQVWNW FQNRRYALRS KLVKSPGNSY  60
LPQNPQSGVA PVRSVPPVPQ QTTVSSGRIS LISKHRDRGS LLLIGLENMN KLELLKKSPI  120
PILGHNVVRN ASESPPMEFE AKSARDGAWY DVQEFLSHRY LETEKEDMKE WIRHFEVGKA  180
L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668440.11e-48PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_010675448.11e-45PREDICTED: putative uncharacterized protein DDB_G0290521
TrEMBLA0A0J8B4653e-47A0A0J8B465_BETVU; Uncharacterized protein
STRINGXP_010668440.15e-48(Beta vulgaris)
STRINGXP_010675448.15e-45(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.25e-26sequence-specific DNA binding transcription factors;sequence-specific DNA binding